 0 Table of Contents |
  1 Home |
  2 Authors |
  3 Conformance |
  4 Contact |
  5 Contributing |
  6 Downloads |
  7 Example CBTN |
  8 Example GRE Go R |
  9 FHIR Basics |
  10 Fhir Version |
  11 IG Versioning |
  12 Module Assays |
  13 Module Family |
  14 Module Filemetadata |
  15 Module Files |
  16 Module Overview |
  17 Module Participant |
  18 Module Phenotype Condition |
  19 Module Research Study |
  20 Module Specimen |
  21 Must Support |
  22 Ncpi |
  23 Research Study Example Cbtn |
  24 Use Case Tbd |
  25 Artifacts Summary |
   25.1 Shared Data Model for Aliquot |
   25.2 Shared Data Model for Biospecimen Collection |
   25.3 Shared Data Model for Condition |
   25.4 Shared Data Model for Family Relationship |
   25.5 Shared Data Model for Family Role |
   25.6 Shared Data Model for File |
   25.7 Shared data model for File Metadata |
   25.8 Shared Data Model for Research Collection |
   25.9 Shared Data Model for Research Data Access Policy |
   25.10 Shared Data Model for Research Participant and Study Mapping |
   25.11 Shared Data Model for Research Participants |
   25.12 Shared Data Model for Research Persons |
   25.13 Shared Data Model for Research Study |
   25.14 Shared Data Model for Sample |
   25.15 Shared Data Model for Study Family |
   25.16 BAM or CRAM file profile |
   25.17 Family Relationship |
   25.18 FHIR Profile for NCPI Sample |
   25.19 Gene fusion or gene expression file profile |
   25.20 Linkage for related samples |
   25.21 MAF (Somatic Mutation) file profile |
   25.22 NCPI biospecimen definition for collected samples |
   25.23 NCPI biospecimen definition for non-collected samples |
   25.24 NCPI Conditon |
   25.25 NCPI DRS File |
   25.26 NCPI FASTQ File |
   25.27 NCPI File |
   25.28 NCPI File Meta Data |
   25.29 NCPI Participant |
   25.30 NCPI Person |
   25.31 NCPI Research Access Policy |
   25.32 NCPI Research Collection |
   25.33 NCPI Research Study |
   25.34 NCPI Research Study Group |
   25.35 NCPI Study Family |
   25.36 NCPI Study Participant |
   25.37 Proteomics file profile |
   25.38 VCF or gVCF file profile |
   25.39 DRS Attachment |
   25.40 Access policy |
   25.41 Access Policy Description |
   25.42 Access Type |
   25.43 Age at Assertion |
   25.44 Age at Last Vital Status Extension |
   25.45 Algorithm used to calculate the hash (and size, where applicable) |
   25.46 Availability Status of Aliquot |
   25.47 Concentration of the Aliquot |
   25.48 Consanguinity Extension |
   25.49 Family Type Extension |
   25.50 If present, only those under the specific Access Policy can access the file in this location. |
   25.51 Label |
   25.52 Laterality Information |
   25.53 Laterality Information |
   25.54 Linkage for related samples |
   25.55 Location Information |
   25.56 Person who recorded assertion about participant |
   25.57 Provides a list of hashes for confirming file transfers |
   25.58 Research Date of Birth Method |
   25.59 Research Population |
   25.60 Research Study Acknowledgement |
   25.61 Research Study Associated Party |
   25.62 Research Study Design |
   25.63 Research Study Result |
   25.64 Research Usage Limitation Disease Code |
   25.65 Research Web Link |
   25.66 Spatial Information |
   25.67 Study Family Description |
   25.68 Study Family Focus |
   25.69 Study Family Focus Extension |
   25.70 The file format used |
   25.71 The size of the file, e.g., in bytes. |
   25.72 Value of hashing the file |
   25.73 Version of the contents of the file |
   25.74 Assertion of Condition Codes |
   25.75 Collection Type |
   25.76 Conditon Codes |
   25.77 Consanguinity Value Codes |
   25.78 Enumerations for how DOB was constructed |
   25.79 Enumerations for the EDAM ontology |
   25.80 Family Types Codes |
   25.81 Laterality Information |
   25.82 Location Information |
   25.83 MeSH Terms |
   25.84 Research Data Access Codes |
   25.85 Research Data Access Type Codes |
   25.86 Study Name Type |
   25.87 Study Personnel Role |
   25.88 Type of Condition |
   25.89 Adaptor trimmed options |
   25.90 Assay strategy options |
   25.91 Assertion of Condition Codes |
   25.92 Collection Type |
   25.93 Elements of Component |
   25.94 Enumerations for how DOB was constructed |
   25.95 Hash Types Code System |
   25.96 Library prep options |
   25.97 Library selection options |
   25.98 NCPI Family Types CodeSystem |
   25.99 NCPI FHIR Codes |
   25.100 NCPI Metadata slices |
   25.101 Platform instrument options |
   25.102 Reference genome examples |
   25.103 Related File Type Code System |
   25.104 Research Data Access Codes |
   25.105 Research Data Access Type Codes |
   25.106 Sample availability for Sample and Aliquot modules |
   25.107 Strandedness options |
   25.108 Study Name Type |
   25.109 Study Personnel Role |
   25.110 Type of Condition |
   25.111 Workflow tool options |
   25.112 Workflow type options |
   25.113 An example family relationship based on data from CBTN |
   25.114 An example family relationship based on data from CBTN |
   25.115 An example family relationship based on data from GREGoR |
   25.116 CBTN General Research Use (GRU) Consent DAC |
   25.117 CBTN General Research Use (GRU) Consent dbGaP |
   25.118 CBTN Operations Lead |
   25.119 Children's Brain Tumor Network (CBTN) |
   25.120 Children's Hospital of Philadelphia |
   25.121 dbGaP PI |
   25.122 dbGaP PI, X01 FY 2021 |
   25.123 Example biospecimen based on data from CBTN |
   25.124 Example biospecimen based on data from GREGoR |
   25.125 Example condition using data from CBTN |
   25.126 Example condition using data from GREGoR |
   25.127 Example family member based on data from GREGoR |
   25.128 Example file based on CBTN |
   25.129 Example file based on GREGoR |
   25.130 Example file metadata for a BAM-CRAM file from GREGoR |
   25.131 Example file metadata from CBTN |
   25.132 Example mappings based on data from GREGoR |
   25.133 Example patients based on data from CBTN |
   25.134 Example patients based on data from CBTN |
   25.135 Example patients based on data from GREGoR |
   25.136 Example patients based on data from GREGoR |
   25.137 Example patients based on data from GREGoR |
   25.138 Example patients based on data from PCGC |
   25.139 Example patients based on data from PCGC |
   25.140 Example study from GREGoR |
   25.141 Genomic Summary Results (GSR) Allowed Access |
   25.142 GREGoR General Research Use (GRU) Consent |
   25.143 Kids First X01s |
   25.144 Participants from the CBTN research study |
   25.145 Participants from the GREGoR research study |
   25.146 Pediatric Brain Tumor Atlas |
   25.147 Registered Tier Access |